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P. S. Tsai, P. Blinder, J. A. Squier and D. Kleinfeld. All-optical, in situ histology of brain tissue with femtosecond laser pulses, in Imaging in Neuroscience and Development, R. Yuste, series editor. Book 2: Optical Imaging in Neuroscience, F. Helmchen and A. Konnerth, editors, Cold Spring Harbor Laboratory Press, NY, Chapter 45. 437-446 (2011)

P.S. Tsai, and D. Kleinfeld. In vivo two-photon laser scanning microscopy with concurrent plasma-mediated ablation: Principles and hardware realization in Methods for In Vivo Optical Imaging, Second Edition, R. D. Frostig, editor, CRC Press, 3:59-115 (2009)

A. Devor, A. Y. Shih, P. S. Tsai, P. Blinder, P. Tian, and D. Kleinfeld. Two-photon laser scanning microscopy as a tool to study cortical vasodynamics under normal and ischemic condition. in Imaging the Brain with Optical Methods, A. Roe, editor, Springer Press, 11:245-262 (2009)

Q. -T. Nguyen, G. O. Clay, N. Nishimura, C. B. Schaffer, L. F. Schroeder, P. S. Tsai, and D. Kleinfeld, Pioneering applications of two-photon microscopy to mammalian neurophysiology: Seven case studies in Handbook of Biomedical Nonlinear Optical Microscopy, B. Masters and P. So, editors. Oxford Press, pp 715-734 (2008)

P. S. Tsai, B. Friedman, C. B. Schaffer, J. A. Squier and D. Kleinfeld, All-optical, in situ histology of neuronal tissue with femtosecond laser pulses in Imaging in Neuroscience and Development: A Laboratory Manual , R. Yuste and A. Konnerth, ed., Cold Spring Harbor Laboratory Press, NY pp 439-444 (2005)

P. S. Tsai, N. Nishimura, E. J. Yoder, E. M. Dolnick, G. A. White, and D. Kleinfeld, Principles, design, and construction of a two photon laser scanning microscope for in vitro and in vivo brain imaging in In Vivo Optical Imaging of Brain Function, R. D. Frostig, ed.,Broca Raton, CRC Press, pp. p113-171 (2002).

C. B. Schaffer, F. F. Ebner, N. Nishimura, B. Friedman, P. S. Tsai, L. F. Schroeder, P. D. Lyden, and D. Kleinfeld, Real-time two-photon fluorescence microscopy of blood flow dynamics following photothrombotic stroke in rat neocortex, in Lasers and Electro-Optics Society, (2003). p.307-308 vol.1

P. S. Tsai, B. Friedman, V. Lev-Ram, Q. Xiong, R. Y. Tsien, D. Kleinfeld, A. I. Ifarraguerri, B. D. Thompson and J. A. Squier, All optical histology of brain tissue: Serial ablation and multiphoton imaging with femtosecond laser pulses in Proceedings of Conference on Lasers and Electro-Optics, Baltimore, MD (2003). p 4-7

C. B. Schaffer, L.F. Schroeder, P. D. Lyden, N. Nishimura, P. S. Tsai, and D. Kleinfeld All-optical thrombotic stroke model for near-surface blood vessels in rat: focal illumination of exogeneous photosensitizers combined with real-time two-photon imaging in Proceedings of SPIE Vol. 4978 (2003), p.222-231.